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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9586892_9587399_F

Intron Information:

Intron Rank:
33
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
9586892 - 9587399
Intron Length:
508

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAACTTTC
5'SS Class:
weak_major
3'SS Sequence:
CTCTGACCAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
TCTTCTGTGACT
Flanking Amino Acid:
SSGTVDMQSNNELFTTVLDM
Intron Amino Acid Position:
1564

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1.2
76
34.8
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
65.3
0.35
1
58.9
36.1
Minor 5ss
57.1
0.24
2.4
70.4
33.6
Minor BPS
62.1
0.46
2
82.48
39.6

Associated Gene:

Gene:
MED12
Ensembl Gene ID:
ENSAPLG00000014908
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015716
9560346 - 9591752
31407