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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9587536_9587806_F

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9587536 - 9587806
Intron Length:
271

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGAGAC
5'SS Class:
major
3'SS Sequence:
TCCACTCGTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAA
U12 Branch Point Sequence:
AATTCTTGAAGT
Flanking Amino Acid:
AYMNLVKKLRKELGDRQSDS
Intron Amino Acid Position:
1610

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
65.6
34.4
Major BPS
74.6
0.61
1
65.6
41.4
Major PPT
70.7
0.47
1
64.8
36.2
Minor 5ss
24.8
-2.9
3.1
24.3
37.2
Minor BPS
60
0.39
1.7
76.52
39.8

Associated Gene:

Gene:
MED12
Ensembl Gene ID:
ENSAPLG00000014908
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015716
9560346 - 9591752
31407