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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9587969_9588542_F

Intron Information:

Intron Rank:
35
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9587969 - 9588542
Intron Length:
574

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGATTTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTCTTTTGATT
Flanking Amino Acid:
AGFDSIFKKEGLQVSTKQKI
Intron Amino Acid Position:
1664

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
86.7
22.1
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
74.7
0.56
1.1
72.4
41.9
Minor 5ss
32
-2.1
3.1
39.9
46.1
Minor BPS
69.5
0.7
1.1
83.52
30.9

Associated Gene:

Gene:
MED12
Ensembl Gene ID:
ENSAPLG00000014908
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015716
9560346 - 9591752
31407