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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9590754_9591364_F

Intron Information:

Intron Rank:
40
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9590754 - 9591364
Intron Length:
611

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACCTCCC
5'SS Class:
major
3'SS Sequence:
TTTTCTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
GAATCTTATACT
Flanking Amino Acid:
GYGHTLGNTQRFPHQSIQQA
Intron Amino Acid Position:
2008

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.6
0.49
1.2
60.8
44.2
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
95.8
1.03
0.5
92.1
18.3
Minor 5ss
40
-1.1
3
54.6
42.5
Minor BPS
48.9
-0
2
66.51
44

Associated Gene:

Gene:
MED12
Ensembl Gene ID:
ENSAPLG00000014908
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015716
9560346 - 9591752
31407