About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_960549_961258_F

Intron Information:

Intron Rank:
128010
Intron Class:
major
Intron Phase:
Intron Coordinates:
960549 - 961258
Intron Length:
710

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGATC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAAACAT
U12 Branch Point Sequence:
ACTGTATAAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.8
82.1
31
Major BPS
63.2
0.33
1.1
69.6
35.7
Major PPT
91.4
0.93
0.6
85.5
29.2
Minor 5ss
31.4
-2.1
3.2
42.1
45
Minor BPS
46.5
-0.2
2
57.85
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018988
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047495
959581 - 961657
2077