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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9619275_9620330_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9619275 - 9620330
Intron Length:
1056

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTCCC
5'SS Class:
strong_major
3'SS Sequence:
ATTCATTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TAGTCTTTTATT
Flanking Amino Acid:
YLNIYIPTEDVKRISKECTR
Intron Amino Acid Position:
106

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
0.9
67.6
37.6
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
83.1
0.74
0.8
76.5
36.6
Minor 5ss
30.2
-2.3
2.8
34
35
Minor BPS
63.4
0.5
1.6
76.46
40.9

Associated Gene:

Gene:
NLGN3
Ensembl Gene ID:
ENSAPLG00000015814
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034814
9618558 - 9633951
15394