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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9619275_9627739_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9619275 - 9627739
Intron Length:
8465

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTCCC
5'SS Class:
strong_major
3'SS Sequence:
CCTCTCCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGGTTAA
U12 Branch Point Sequence:
CTGTGGTTAACC
Flanking Amino Acid:
YLNIYIPTEDDIRDSGAKPV
Intron Amino Acid Position:
106

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
0.9
67.6
37.6
Major BPS
57
0.17
1.3
49.4
46
Major PPT
81.7
0.71
0.7
72.7
32.1
Minor 5ss
30.2
-2.3
2.8
34
35
Minor BPS
49.2
-0
2.4
65.47
46.4

Associated Gene:

Gene:
NLGN3
Ensembl Gene ID:
ENSAPLG00000015814
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037974
9618558 - 9633951
15394