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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9620391_9625372_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9620391 - 9625372
Intron Length:
4982

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTAGC
5'SS Class:
strong_major
3'SS Sequence:
GTTTGGTCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCCT
U12 Branch Point Sequence:
TTTTCCTTTCTG
Flanking Amino Acid:
KPNKKICRKGGASAKKQGED
Intron Amino Acid Position:
126

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
77.9
36.9
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
67.4
0.39
0.9
58.4
43.1
Minor 5ss
42.2
-0.9
2.5
54.4
42.8
Minor BPS
45.7
-0.4
3.6
71.2
42.2

Associated Gene:

Gene:
NLGN3
Ensembl Gene ID:
ENSAPLG00000015814
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034814
9618558 - 9633951
15394