Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9625433_9627739_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9625433 - 9627739

Intron Length:

2307

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATTTCTG

5'SS Class:

major

3'SS Sequence:

CCTCTCCTTCCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGGTTAA

U12 Branch Point Sequence:

CTGTGGTTAACC

Flanking Amino Acid:

LADNDGDEDEDIRDSGAKPV

Intron Amino Acid Position:

126

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.4

0.62

67.2

43.7

Major BPS

0.17

1.3

49.4

Major PPT

81.7

0.71

0.7

72.7

32.1

Minor 5ss

-0.7

2.8

58.7

45.8

Minor BPS

49.2

-0

2.4

65.47

46.4

Associated Gene:

Gene:

NLGN3

Ensembl Gene ID:

ENSAPLG00000015814

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034814

9618558 - 9633951

15394

ENSAPLT00000016483

9618558 - 9633951

15394