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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9647698_9647810_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9647698 - 9647810
Intron Length:
113

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCC|GTAAGTGCC
5'SS Class:
major
3'SS Sequence:
CTTGTTTCCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTGAG
U12 Branch Point Sequence:
CTTGTTTCCACA
Flanking Amino Acid:
TSKGEELRFGPKPMRIKEDI
Intron Amino Acid Position:
1156

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69
0.45
1.3
65.5
42
Major BPS
49.8
-0
1.7
51.1
46.3
Major PPT
81.1
0.7
0.8
75.9
32.8
Minor 5ss
35.8
-1.6
3.2
49.6
39.8
Minor BPS
45
-0.4
2
58
42.5

Associated Gene:

Gene:
ZMYM3
Ensembl Gene ID:
ENSAPLG00000000982
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001176
9644080 - 9670346
26267