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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9648425_9649259_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9648425 - 9649259
Intron Length:
835

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGAGCT
5'SS Class:
major
3'SS Sequence:
TGTTTCCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAC
U12 Branch Point Sequence:
GCTTTTCCACCT
Flanking Amino Acid:
GQDLEADFPKNPLDINPSVD
Intron Amino Acid Position:
1065

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.1
66.2
38
Major BPS
67.4
0.43
1.3
78.4
35.2
Major PPT
87.9
0.85
0.7
85.4
29.3
Minor 5ss
34.3
-1.8
3.5
45.4
43.3
Minor BPS
42.9
-0.4
2
60.73
43.3

Associated Gene:

Gene:
ZMYM3
Ensembl Gene ID:
ENSAPLG00000000982
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001176
9644080 - 9670346
26267