About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9651164_9651666_R


Intron Information:

Intron Rank:
14

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
9651164 - 9651666

Intron Length:
503

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
ACG|GTAAGGCCC

5'SS Class:
major

3'SS Sequence:
CTGCGTTTCCTAG|T

3'SS Class:
major_PPT

U2 Branch Point Sequence:
ACACCAA

U12 Branch Point Sequence:
TTTTGCTGGACA

Flanking Amino Acid:
SSPQKAETNTLSAKTSSAQM

Intron Amino Acid Position:
863

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
78.3
0.67
1
62.2
41.1

Major BPS
44.1
-0.3
1.2
46.8
35.8

Major PPT
68.9
0.43
0.9
61
40.1

Minor 5ss
32.5
-2
3.3
44.2
43.2

Minor BPS
62.2
0.38
2
79.36
36.8

Associated Gene:

Gene:
ZMYM3

Ensembl Gene ID:

Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

9644080 - 9670346
26267