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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9661294_9661729_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9661294 - 9661729
Intron Length:
436

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGATCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TGTCCCTGCACT
Flanking Amino Acid:
PGKKICTFCKKEIWNTKDSV
Intron Amino Acid Position:
431

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
0.9
75
35.2
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
79.4
0.66
0.9
73.4
36.2
Minor 5ss
30.7
-2.2
3.3
40.4
40
Minor BPS
58
0.33
2
79.65
41.7

Associated Gene:

Gene:
ZMYM3
Ensembl Gene ID:
ENSAPLG00000000982
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001176
9644080 - 9670346
26267