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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9662022_9662718_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9662022 - 9662718
Intron Length:
697

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTGAGTAAC
5'SS Class:
major
3'SS Sequence:
CTCTGCTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAT
U12 Branch Point Sequence:
AATGGGGAATTT
Flanking Amino Acid:
RPETVNSSESIPVSDEDSDA
Intron Amino Acid Position:
334

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1
71.6
33.8
Major BPS
81.9
0.79
0.9
80.1
30
Major PPT
82.1
0.72
0.8
76.1
32.5
Minor 5ss
32.8
-2
2.7
42.3
38.4
Minor BPS
25.7
-1.7
2.5
42.1
41.9

Associated Gene:

Gene:
ZMYM3
Ensembl Gene ID:
ENSAPLG00000000982
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001176
9644080 - 9670346
26267