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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9662792_9663194_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9662792 - 9663194
Intron Length:
403

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
GAATGTCTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
ATTTTCTGAATG
Flanking Amino Acid:
GKGSETPAEKEQKRSERARR
Intron Amino Acid Position:
310

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
74.8
37
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
65.4
0.35
1
55.2
45.2
Minor 5ss
26.2
-2.7
2.9
30.9
42.7
Minor BPS
67
0.4
1.4
70.32
37

Associated Gene:

Gene:
ZMYM3
Ensembl Gene ID:
ENSAPLG00000000982
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001176
9644080 - 9670346
26267