About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9664581_9669844_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
9664581 - 9669844
Intron Length:
5264

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAGCTCA
5'SS Class:
strong_major
3'SS Sequence:
CTCTCGTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
TTTCCATTAACT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.98
0.9
71
40.7
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
80.8
0.69
0.8
72.1
37.9
Minor 5ss
33.8
-1.8
4
47.9
47.8
Minor BPS
79.1
0.99
1.5
95.32
30.2

Associated Gene:

Gene:
ZMYM3
Ensembl Gene ID:
ENSAPLG00000000982
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001176
9644080 - 9670346
26267