About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9683244_9684598_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9683244 - 9684598
Intron Length:
1355

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTATGAATA
5'SS Class:
major
3'SS Sequence:
ATCTCTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
GGATCTTTATCA
Flanking Amino Acid:
EGFKGNFTDAREPPDMRMGQ
Intron Amino Acid Position:
289

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
73.8
36.6
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
84.9
0.78
0.8
76.9
36.7
Minor 5ss
43.6
-0.7
2.9
58.4
45.9
Minor BPS
60.1
0.31
1.6
65.9
40.2

Associated Gene:

Gene:
NONO
Ensembl Gene ID:
ENSAPLG00000002642
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039286
9677166 - 9692201
15036