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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9683244_9685196_F

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
9683244 - 9685196
Intron Length:
1953

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTATGAATA
5'SS Class:
major
3'SS Sequence:
ATCCTACAGGGAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
TAGATTAGAACT
Flanking Amino Acid:
EGFKGNFTDALMWCFVVLVH
Intron Amino Acid Position:
347

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
73.8
36.6
Major BPS
79
0.72
1
78.4
31.2
Major PPT
45.3
-0.2
1.7
47.9
39.2
Minor 5ss
43.6
-0.7
2.9
58.4
45.9
Minor BPS
46.6
-0.1
1.7
63.45
40.5

Associated Gene:

Gene:
NONO
Ensembl Gene ID:
ENSAPLG00000002642
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002689
9676772 - 9688550
11779