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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9684642_9685248_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9684642 - 9685248
Intron Length:
607

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAATT
5'SS Class:
strong_major
3'SS Sequence:
GGTTCTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GGTTCAT
U12 Branch Point Sequence:
TTCTGGTTCATG
Flanking Amino Acid:
DMRMGQMGMGGTIGMNNRGA
Intron Amino Acid Position:
303

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95
1.06
0.7
93.7
19.9
Major BPS
67
0.42
1.4
71.4
45.1
Major PPT
82
0.72
0.9
73.1
42.1
Minor 5ss
39.4
-1.2
3.1
57.6
46.6
Minor BPS
41.7
-0.8
2.7
54.08
47.7

Associated Gene:

Gene:
NONO
Ensembl Gene ID:
ENSAPLG00000002642
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039286
9677166 - 9692201
15036