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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9692957_9693089_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9692957 - 9693089
Intron Length:
133

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGCGGG
5'SS Class:
major
3'SS Sequence:
TTTCCCCCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCGAAT
U12 Branch Point Sequence:
CCTTCCCGAAAG
Flanking Amino Acid:
QRFDPEHNAEDACLYHPGVP
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1.1
58
47.1
Major BPS
57
0.17
1.4
65.8
39.5
Major PPT
84.8
0.78
0.7
81.9
22.9
Minor 5ss
35.3
-1.7
3.3
38.2
46.7
Minor BPS
47.1
-0.3
2
54.34
46

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020913
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025122
9692893 - 9693757
865