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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9712772_9713728_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
9712772 - 9713728
Intron Length:
957

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATGGC
5'SS Class:
strong_major
3'SS Sequence:
TCTGACTGGTTAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
TGTCTTCTGACT
Flanking Amino Acid:
MGSLQPVRRPDEDEDDYDAD
Intron Amino Acid Position:
186

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
73
36.9
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
58.6
0.19
1.1
58.2
42.8
Minor 5ss
32.4
-2
3.3
43.9
43.9
Minor BPS
52.7
0.17
1.6
73.72
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003176
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003307
9711067 - 9740685
29619