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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9718279_9718519_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9718279 - 9718519
Intron Length:
241

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGAAG
5'SS Class:
major
3'SS Sequence:
ATGGTTGTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAAATAT
U12 Branch Point Sequence:
GTGTCTAAAACT
Flanking Amino Acid:
GKEKQAPEQQVSLDEDKPWY
Intron Amino Acid Position:
503

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
71.5
39.9
Major BPS
59.7
0.24
1.1
55.7
39.9
Major PPT
72.5
0.51
1
65.7
44.8
Minor 5ss
31.7
-2.1
3.1
39.3
46.2
Minor BPS
52
0.14
2
73.35
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003176
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003307
9711067 - 9740685
29619