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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9720214_9720316_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9720214 - 9720316
Intron Length:
103

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGATTA
5'SS Class:
strong_major
3'SS Sequence:
TTCACTGGCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
GTGTCCCTAATG
Flanking Amino Acid:
LLKHIKKKAKMREQERQASG
Intron Amino Acid Position:
696

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
78
32.8
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
65.7
0.35
1
60
40.4
Minor 5ss
40.4
-1.1
3.3
56.1
48.1
Minor BPS
60.7
0.2
1.8
64.95
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003176
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003307
9711067 - 9740685
29619