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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9723618_9724030_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9723618 - 9724030
Intron Length:
413

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACATT
5'SS Class:
strong_major
3'SS Sequence:
TATTTTTCTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAT
U12 Branch Point Sequence:
TTTTCTCTAATA
Flanking Amino Acid:
SMIAAEQRLKDAGYGEKSFF
Intron Amino Acid Position:
947

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
84.2
33.9
Major BPS
82.2
0.8
0.9
81.6
27
Major PPT
85.5
0.8
0.7
81.9
29.7
Minor 5ss
44.7
-0.6
3.1
66
45.2
Minor BPS
72.4
0.7
1.6
83.86
29.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003176
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003307
9711067 - 9740685
29619