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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9724659_9724810_F

Intron Information:

Intron Rank:
20
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
9724659 - 9724810
Intron Length:
152

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATCGTTC
5'SS Class:
weak_major
3'SS Sequence:
TTTCTCTGAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTTCTCTGAACA
Flanking Amino Acid:
KIPNKPTQQKDDKEPQPVKK
Intron Amino Acid Position:
1024

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.7
0.47
1.2
66.5
40
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
76.2
0.59
1
73.4
35.8
Minor 5ss
60.3
0.35
2.7
76
40.1
Minor BPS
72.2
0.69
1.4
81.77
32.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003176
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003307
9711067 - 9740685
29619