About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9724931_9725105_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9724931 - 9725105
Intron Length:
175

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCATG
5'SS Class:
strong_major
3'SS Sequence:
TTCCTCTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAG
U12 Branch Point Sequence:
TTCCTCTTTACA
Flanking Amino Acid:
LRKFGVPEEEIKKLSRWEVI
Intron Amino Acid Position:
1064

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
77.8
38.7
Major BPS
58.2
0.2
1.5
67.3
37.8
Major PPT
88.4
0.86
0.7
83.3
25.2
Minor 5ss
37.5
-1.4
3
47.8
47.9
Minor BPS
62.5
0.39
1.6
72.39
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003176
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003307
9711067 - 9740685
29619