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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9726158_9727049_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9726158 - 9727049
Intron Length:
892

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTAAGTAAC
5'SS Class:
major
3'SS Sequence:
ATTTTAACATCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TCTATTTTAACA
Flanking Amino Acid:
KKDRRDKKGLSSGASANSHK
Intron Amino Acid Position:
1203

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1.1
74.4
36.1
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
71.5
0.48
1
69.6
40
Minor 5ss
38
-1.4
2.8
46.6
41.8
Minor BPS
71.3
0.66
1.2
75.15
36.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003176
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003307
9711067 - 9740685
29619