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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9727258_9727737_F

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9727258 - 9727737
Intron Length:
480

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGACCT
5'SS Class:
major
3'SS Sequence:
TGTTTTTCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TTCTGTTTATTT
Flanking Amino Acid:
RIRTTKDEEFIRKFALFDEQ
Intron Amino Acid Position:
1272

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
71.1
38.8
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
90.4
0.91
0.7
89
28.1
Minor 5ss
37
-1.5
3.3
54.6
42.2
Minor BPS
53.6
0.19
2
74.81
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003176
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003307
9711067 - 9740685
29619