Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9728285_9728547_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9728285 - 9728547

Intron Length:

263

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGGGAA

5'SS Class:

strong_major

3'SS Sequence:

TGTTTTTACCTAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAC

U12 Branch Point Sequence:

TTGTTTTTACCT

Flanking Amino Acid:

KIVLGKQLIESADEVRRKSL

Intron Amino Acid Position:

1398

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.94

0.8

78.3

31.1

Major BPS

86.6

0.91

0.8

77.7

36.7

Major PPT

75.8

0.58

0.9

70.2

40.4

Minor 5ss

28.5

-2.5

3.5

37.1

47.5

Minor BPS

67.4

0.62

1.6

82.67

39.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000003176

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003307

9711067 - 9740685

29619