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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9728944_9730248_F

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9728944 - 9730248
Intron Length:
1305

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCATCCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TCTCTTTTCATC
Flanking Amino Acid:
IINDMRDLPNTYPFHTPVNP
Intron Amino Acid Position:
1468

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
82.2
25.6
Major BPS
100
1.24
0.5
100
0
Major PPT
83.7
0.76
0.7
81.9
28.7
Minor 5ss
40.8
-1
3
53.7
43.8
Minor BPS
50.5
-0
1.7
62.33
38.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003176
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003307
9711067 - 9740685
29619