About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9731885_9732256_F

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9731885 - 9732256
Intron Length:
372

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAG|GCAAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTATTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
GCATTCTGAATT
Flanking Amino Acid:
LDLCDEKLKEKEDKLARLEK
Intron Amino Acid Position:
1550

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.4
1.14
0.7
87.9
27.4
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
84.1
0.77
0.8
78.4
34
Minor 5ss
26.5
-2.7
3.8
42.1
44.5
Minor BPS
60.4
0.4
1.4
70.06
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003176
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003307
9711067 - 9740685
29619