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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9732380_9733440_F

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9732380 - 9733440
Intron Length:
1061

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTATGTAGC
5'SS Class:
major
3'SS Sequence:
TTCTTTCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
GCTTTCTAACCT
Flanking Amino Acid:
VTQKMMAVPDSWPFHHPVNK
Intron Amino Acid Position:
1591

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1.1
70.9
39.3
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
93.2
0.97
0.6
92.2
18.2
Minor 5ss
44.6
-0.6
2.5
58.5
39.4
Minor BPS
52
0.14
2
71.56
45.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003176
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003307
9711067 - 9740685
29619