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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9733534_9733608_F

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9733534 - 9733608
Intron Length:
75

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGTAGC
5'SS Class:
strong_major
3'SS Sequence:
CAATCTCTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTGAT
U12 Branch Point Sequence:
TTAGACTTGATT
Flanking Amino Acid:
NPMDLETICKNISKHKYQNR
Intron Amino Acid Position:
1622

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
74
36.6
Major BPS
75
0.62
1
65.3
41.5
Major PPT
76.2
0.59
0.9
69.6
36.1
Minor 5ss
36.7
-1.5
2.6
45.3
42.8
Minor BPS
60
0.4
1.6
76.66
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003176
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003307
9711067 - 9740685
29619