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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9733694_9734206_F

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9733694 - 9734206
Intron Length:
513

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGTGGT
5'SS Class:
major
3'SS Sequence:
TTTATTACTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TGTTTATTACTA
Flanking Amino Acid:
LILANSIKYNGPDSQYTKTA
Intron Amino Acid Position:
1650

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
68.8
42.2
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
83.7
0.76
0.8
77.8
35.2
Minor 5ss
33.2
-1.9
3.5
45.9
44.6
Minor BPS
53.6
0.11
1.8
68.66
37.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003176
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003307
9711067 - 9740685
29619