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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9738763_9739192_F

Intron Information:

Intron Rank:
37
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
9738763 - 9739192
Intron Length:
430

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGT|GTATGTTTC
5'SS Class:
weak_major
3'SS Sequence:
GTTTATTACACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAC
U12 Branch Point Sequence:
TTATCACCAAAT
Flanking Amino Acid:
SDEEGDNPFSSIQLSESGSD
Intron Amino Acid Position:
1795

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68
0.43
1.1
67.9
38.2
Major BPS
78.3
0.7
1
80
32.1
Major PPT
74.6
0.55
1
69.1
40.7
Minor 5ss
60
0.34
2.2
70.5
40.1
Minor BPS
46.8
-0.1
2.2
73.33
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003176
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003307
9711067 - 9740685
29619