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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9739371_9740468_F

Intron Information:

Intron Rank:
38
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9739371 - 9740468
Intron Length:
1098

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTAGA
5'SS Class:
strong_major
3'SS Sequence:
TCGTTTCTTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATTAT
U12 Branch Point Sequence:
TATGGTGTAATA
Flanking Amino Acid:
TSQVMEDSNISYGSYEEPDP
Intron Amino Acid Position:
1854

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
79.9
35
Major BPS
68.1
0.45
1
58.1
38.5
Major PPT
80.5
0.69
0.8
73.5
37.1
Minor 5ss
35.2
-1.7
2.7
43.3
43.5
Minor BPS
44.5
-0.4
2.3
59.37
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003176
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003307
9711067 - 9740685
29619