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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9745477_9746496_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9745477 - 9746496
Intron Length:
1020

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAGAA
5'SS Class:
strong_major
3'SS Sequence:
TAATTTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTGTAAT
U12 Branch Point Sequence:
GTTTTGCTAACT
Flanking Amino Acid:
SIHFQCRRLDRSAHFSTLAI
Intron Amino Acid Position:
63

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
71.3
34.5
Major BPS
66.7
0.41
1.4
69.7
44.2
Major PPT
85
0.79
0.9
77.3
41.3
Minor 5ss
28.3
-2.5
3.5
37.3
47.4
Minor BPS
53.5
0.19
2.3
81.08
40.4

Associated Gene:

Gene:
OGT
Ensembl Gene ID:
ENSAPLG00000003836
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004014
9741946 - 9764515
22570