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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9755581_9756812_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9755581 - 9756812
Intron Length:
1232

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAGGT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTCTTGACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
ATTTTCTTGACA
Flanking Amino Acid:
ERHGNLCLDKINVLHKPPYE
Intron Amino Acid Position:
525

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
69.9
41.1
Major BPS
78.6
0.71
1
78.6
31
Major PPT
80.2
0.68
1
76.8
36.8
Minor 5ss
30.8
-2.2
3.7
47.1
48.3
Minor BPS
80.5
0.95
1
84.28
28.2

Associated Gene:

Gene:
OGT
Ensembl Gene ID:
ENSAPLG00000003836
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004014
9741946 - 9764515
22570