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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9760527_9760657_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9760527 - 9760657
Intron Length:
131

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTAGG
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTCAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTGTTTTCAACA
Flanking Amino Acid:
DHANMFPHLKKKAVIDFKSN
Intron Amino Acid Position:
707

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.87
0.9
74.4
41.9
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
80.7
0.69
0.9
77.7
35.5
Minor 5ss
41.2
-1
2.5
51.1
45.4
Minor BPS
66.1
0.5
1.5
74.78
37.2

Associated Gene:

Gene:
OGT
Ensembl Gene ID:
ENSAPLG00000003836
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004014
9741946 - 9764515
22570