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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9762500_9763188_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9762500 - 9763188
Intron Length:
689

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
GTTATTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
TTATTTTTACAG
Flanking Amino Acid:
DPSTLQMWANILKRVPNSVL
Intron Amino Acid Position:
853

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
77.8
30.2
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
85.9
0.81
0.8
80
37.5
Minor 5ss
34.2
-1.8
3.4
48
41.4
Minor BPS
52.1
-0
1.8
60.63
41.5

Associated Gene:

Gene:
OGT
Ensembl Gene ID:
ENSAPLG00000003836
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004014
9741946 - 9764515
22570