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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9763442_9763628_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9763442 - 9763628
Intron Length:
187

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACGCAA
5'SS Class:
major
3'SS Sequence:
TTTGTTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
ATTTCTTTCATC
Flanking Amino Acid:
WAGTPMVTMPGETLASRVAA
Intron Amino Acid Position:
937

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.6
1.2
65.8
41.7
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
92.3
0.95
0.7
87.5
30
Minor 5ss
35.6
-1.6
3.3
47
48.3
Minor BPS
66.1
0.49
1.7
76.18
34.5

Associated Gene:

Gene:
OGT
Ensembl Gene ID:
ENSAPLG00000003836
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004014
9741946 - 9764515
22570