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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9763753_9764340_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9763753 - 9764340
Intron Length:
588

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTAAGTGAC
5'SS Class:
major
3'SS Sequence:
ACTCTTTTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAC
U12 Branch Point Sequence:
CTGACTTTAACT
Flanking Amino Acid:
IAVKLGTDLEYLKKIRGKVW
Intron Amino Acid Position:
978

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.65
1
71.3
32.5
Major BPS
77.3
0.68
1
79.3
29.4
Major PPT
81.4
0.71
0.8
77
30.9
Minor 5ss
34.8
-1.7
3.2
45.1
38.2
Minor BPS
72.2
0.78
1.3
80.24
42

Associated Gene:

Gene:
OGT
Ensembl Gene ID:
ENSAPLG00000003836
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004014
9741946 - 9764515
22570