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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9777130_9777690_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9777130 - 9777690
Intron Length:
561

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTGAGTACA
5'SS Class:
major
3'SS Sequence:
GATACCCTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGTTAAT
U12 Branch Point Sequence:
TTGCAGTTAATT
Flanking Amino Acid:
FQSIQAQKSSEYERIEIPIH
Intron Amino Acid Position:
172

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1
70.5
35.4
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
67
0.38
0.9
59.2
37.7
Minor 5ss
31.8
-2.1
2.6
31.3
35.7
Minor BPS
50.5
0.09
2.2
74.29
42.7

Associated Gene:

Gene:
BRCC3
Ensembl Gene ID:
ENSAPLG00000004484
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004603
9775584 - 9779799
4216