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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9777467_9777690_R

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
9777467 - 9777690
Intron Length:
224

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTGAGTACA
5'SS Class:
major
3'SS Sequence:
AAAGCTGATGTAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
AGTAATTTAATT
Flanking Amino Acid:
FQSIQAQKSSETLSFVCEYE
Intron Amino Acid Position:
191

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1
70.5
35.4
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
51.8
0.04
1.1
44.4
41.6
Minor 5ss
31.8
-2.1
2.6
31.3
35.7
Minor BPS
59.7
0.38
1.5
73.04
37.7

Associated Gene:

Gene:
BRCC3
Ensembl Gene ID:
ENSAPLG00000004484
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044638
9775584 - 9779799
4216