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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9784336_9784479_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
9784336 - 9784479
Intron Length:
144

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGGCGACA
5'SS Class:
weak_major
3'SS Sequence:
TTGTCGCTTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAA
U12 Branch Point Sequence:
ACGTATTGAACT
Flanking Amino Acid:
EIEHHLMVRMLGGVEELLLK
Intron Amino Acid Position:
96

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
55.2
0.12
1.2
52
40.6
Major BPS
79.4
0.73
0.9
69.6
37.5
Major PPT
79.6
0.67
0.9
72.7
37.6
Minor 5ss
31.4
-2.1
3.3
37
42.5
Minor BPS
53.5
0.19
1.6
68.03
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004773
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004906
9783947 - 9784527
581