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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9785849_9787977_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9785849 - 9787977
Intron Length:
2129

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCAAAT
5'SS Class:
major
3'SS Sequence:
TTCTATTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TCCTTTCTATTT
Flanking Amino Acid:
QACEIQKCLQANNYVESKCA
Intron Amino Acid Position:
20

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.6
0.49
1.2
71.8
39.8
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
88
0.85
0.8
80.5
36.8
Minor 5ss
39.6
-1.2
3.2
57.7
46.5
Minor BPS
46.6
-0.1
1.8
62.98
42.5

Associated Gene:

Gene:
CMC4
Ensembl Gene ID:
ENSAPLG00000004774
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004910
9785791 - 9788147
2357