Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9826116_9826295_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

9826116 - 9826295

Intron Length:

180

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAC|GTACGTGTG

5'SS Class:

major

3'SS Sequence:

CCTGTGTTTTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTATAAG

U12 Branch Point Sequence:

TGGCCGGCCACC

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.5

0.46

1.3

67.3

44.3

Major BPS

48.4

-0.1

1.7

45.4

Major PPT

75.4

0.57

0.9

72.6

37.6

Minor 5ss

36.6

-1.5

3.5

47.6

Minor BPS

32.6

-1.3

2.7

44.46

43.4

Associated Gene:

Gene:

MPP1

Ensembl Gene ID:

ENSAPLG00000005377

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005594

9825583 - 9840912

15330