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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9827078_9831583_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9827078 - 9831583
Intron Length:
4506

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCCCC
5'SS Class:
strong_major
3'SS Sequence:
TTTGCCCTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTAAA
U12 Branch Point Sequence:
TTTGCCCTGACA
Flanking Amino Acid:
HLLQNRAKPEAVTQAPNAMT
Intron Amino Acid Position:
168

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
65.8
40.2
Major BPS
60.4
0.26
1.1
61.5
32.5
Major PPT
73.9
0.54
1
69.2
37
Minor 5ss
33.7
-1.9
3
42.6
44.4
Minor BPS
64.9
0.46
1.8
79.46
36.6

Associated Gene:

Gene:
MPP1
Ensembl Gene ID:
ENSAPLG00000005377
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005594
9825583 - 9840912
15330