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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9827078_9835727_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9827078 - 9835727
Intron Length:
8650

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCCCC
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCCAAC
U12 Branch Point Sequence:
GCCGTGCCAACT
Flanking Amino Acid:
HLLQNRAKPEMFMRAQFDYD
Intron Amino Acid Position:
168

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
65.8
40.2
Major BPS
48.7
-0
1.3
56.4
38.8
Major PPT
88.3
0.86
0.7
80.7
31.3
Minor 5ss
33.7
-1.9
3
42.6
44.4
Minor BPS
36.1
-0.9
2.3
48.49
44.6

Associated Gene:

Gene:
MPP1
Ensembl Gene ID:
ENSAPLG00000005377
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038772
9826296 - 9840912
14617