About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9833128_9833627_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9833128 - 9833627
Intron Length:
500

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGGTATC
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTTCACTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTCCAA
U12 Branch Point Sequence:
CCTTTGTTCACT
Flanking Amino Acid:
HSVDQLQKMLKETQGMVSIK
Intron Amino Acid Position:
271

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.73
1
77.9
36.8
Major BPS
48.7
-0
1.2
58.4
37.9
Major PPT
72.9
0.51
0.9
67
39.2
Minor 5ss
39
-1.2
3.1
50.7
40.4
Minor BPS
48.1
-0
2.4
70.32
47.1

Associated Gene:

Gene:
MPP1
Ensembl Gene ID:
ENSAPLG00000005377
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005594
9825583 - 9840912
15330